PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G034400.2
Common NamePHAVU_006G034400g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family M-type_MADS
Protein Properties Length: 85aa    MW: 9678.07 Da    PI: 10.2749
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G034400.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF101.33.7e-322474151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+++fss+g+lyey++
  Phvul.006G034400.2 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYAN 74
                        79***********************************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554559.68E-311679IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.8241676IPR002100Transcription factor, MADS-box
SMARTSM004324.6E-421675IPR002100Transcription factor, MADS-box
CDDcd002653.61E-401775No hitNo description
PRINTSPR004047.4E-341838IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001872IPR002100Transcription factor, MADS-box
PfamPF003191.1E-272572IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-343853IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-345374IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MELPNQAQEG SSQKKMGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL  60
VVFSSRGRLY EYANNRLYQH TNPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-221677162Myocyte-specific enhancer factor 2B
1tqe_Q3e-221677162Myocyte-specific enhancer factor 2B
1tqe_R3e-221677162Myocyte-specific enhancer factor 2B
1tqe_S3e-221677162Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-127AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007146364.12e-57hypothetical protein PHAVU_006G034400g
SwissprotP293811e-39AGL1_ARATH; Agamous-like MADS-box protein AGL1
SwissprotQ408859e-40AG_PETHY; Floral homeotic protein AGAMOUS
SwissprotQ435859e-40AG_TOBAC; Floral homeotic protein AGAMOUS
TrEMBLV7BMU32e-57V7BMU3_PHAVU; Uncharacterized protein
STRINGGLYMA18G12590.24e-46(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.28e-42MIKC_MADS family protein